miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST002799
species: Triticum turgidum subsp. durum
miRNA family: MIR1436
source: miRNEST

Taxonomy by NCBI:
Triticum turgidum subsp. durum Triticum turgidum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTATTTTGGGACGGAGGGAGT

miRNA*
TATTCCTCCGTCCCATAATAAGT

mismatches: 1
bulges: 2

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pre-miRNA
TATATACTATTCCTCCGTCCCATAATAAGTGTCTCAACTTTGTAGTAACTCTAGTACAAAGTTGTACTAAGCTTGAGACAGTTATTTTGGGACGGAGGGA
GT
ACTAT


dot-bracket secondary structure
....((((..((((((((((((.(((((.(((((((((((.(((.(((((.........)))))))).))).)))))))).))))).)))))))))))))
))
)....



SIMILARITIES
miRBase osa-MIR1862e: 0.00002

PMRD osa-miRf10099-akr: 0.000001

microPC miR1439: 1e-25
UniProt no hits

RFAM MIR1122: 5e-34
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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